TY  - BOOK
AU  - Hamacher,Michael
AU  - Eisenacher,Martin
AU  - Stephan,Christian
TI  - Data mining in proteomics: From standards to applications
T2  - Springer protocols
SN  - 9781607619864 (alk. paper)
U1  - 572.60285 HAM 22
PY  - 2011///
CY  - New York, NY
PB  - Humana Press
KW  - Proteomics
KW  - methods
KW  - Data mining
KW  - Medical Informatics
N1  - Includes bibliographical references and index; Instruments and methods in proteomics / Caroline May ... [and others] -- In depth protein characterization by mass spectrometry / Daniel Chamrad, Gerhard Körting, and Martin Blüggel -- Analysis of phosphoproteomics data / Christoph Schaab -- The origin and early reception of sequence databases / Joel B. Hagen -- Laboratory data and sample management for proteomics / Jari Häkkinen and Fredrik Levander -- PRIDE and "database on demand" as valuable tools for computational proteomics / Juan Antonio Vizcaíno ... [and others] -- Analysing proteomics identifications in the context of functional and structural protein annotation : integrating annotation using PICR, DAS, and BioMart / Philip Jones -- Tranche distributed repository and ProteomeCommons.org / Bryan E. Smith ... [and others] -- Data standardization by the HUPO-PSI : how has the community benefitted? / Sandra Orchard and Henning Hermjakob -- mzIdentML : an open community-built standard format for the results of proteomics spectrum identification algorithms / Martin Eisenacher -- Spectra, chromatograms, metadata : mzML-the standard data format for mass spectrometer output / Michael Turewicz and Eric W. Deutsch -- imzML : imaging mass spectrometry markup language : a common data format for mass spectrometry imaging / Andreas Römpp ... [and others] -- Tandem mass spectrometry spectral libraries and library searching / Eric W. Deutsch -- Inter-lab proteomics : data mining in collaborative projects on the basis of the HUPO Brain Proteome Project's pilot studies / Michael Hamacher ... [and others] -- Data management and data integration in the HUPO Plasma Proteome Project / Gilbert S. Omenn -- Statistics in experimental design, preprocessing, and analysis of proteomics data / Klaus Jung -- The evolution of protein interaction networks / Andreas Schüler and Erich Bornberg-Bauer -- Cytoscape : software for visualization and analysis of biological networks / Michael Kohl, Sebastian Wiese, and Bettina Warscheid -- Text mining for systems modeling / Axel Kowald and Seastian Schmeier -- Identification of alternatively spliced transcripts using a proteomic informatics approach / Rajasree Menon and Gilbert S. Omenn -- Distributions of ion series in ETD and CID spectra : making a comparison / Sarah R. Hart ... [and others] -- Evaluation of peak-picking algorighms for protein mass spectrometry / Chris Bauer, Rainer Cramer, and Johannes Schuchhardt -- OpenMS and TOPP : open source software for LC-MS data analysis / Andreas Bertsch ... [and others] -- LC/MS data processing for label-free quantitative analysis / Patricia M. Palagi ... [and others] -- Spectral properties of correlation matrices-towards enhanced spectral clustering / Daniel Fulger and Enrico Scalas -- Standards, databases, and modeling tools in systems biology / Michael Kohl -- Modeling of cellular processes : methods, data, and requirements / Thomas Millat ... [and others]
ER  -