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Data mining in proteomics

Collection : Springer protocols | Methods in molecular biology . v. 696 1064-3745 Publié par : Humana Press (New York, NY) Détails physiques : xii, 461 pages illustrations (some color) 27 cm. ISBN :9781607619864 (alk. paper); 1607619865 (alk. paper). Année : 2011
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Livre La bibliothèque des Sciences Exactes et Naturelles
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Includes bibliographical references and index

Instruments and methods in proteomics / Caroline May ... [and others] -- In depth protein characterization by mass spectrometry / Daniel Chamrad, Gerhard Körting, and Martin Blüggel -- Analysis of phosphoproteomics data / Christoph Schaab -- The origin and early reception of sequence databases / Joel B. Hagen -- Laboratory data and sample management for proteomics / Jari Häkkinen and Fredrik Levander -- PRIDE and "database on demand" as valuable tools for computational proteomics / Juan Antonio Vizcaíno ... [and others] -- Analysing proteomics identifications in the context of functional and structural protein annotation : integrating annotation using PICR, DAS, and BioMart / Philip Jones -- Tranche distributed repository and ProteomeCommons.org / Bryan E. Smith ... [and others] -- Data standardization by the HUPO-PSI : how has the community benefitted? / Sandra Orchard and Henning Hermjakob -- mzIdentML : an open community-built standard format for the results of proteomics spectrum identification algorithms / Martin Eisenacher -- Spectra, chromatograms, metadata : mzML-the standard data format for mass spectrometer output / Michael Turewicz and Eric W. Deutsch -- imzML : imaging mass spectrometry markup language : a common data format for mass spectrometry imaging / Andreas Römpp ... [and others] -- Tandem mass spectrometry spectral libraries and library searching / Eric W. Deutsch -- Inter-lab proteomics : data mining in collaborative projects on the basis of the HUPO Brain Proteome Project's pilot studies / Michael Hamacher ... [and others] -- Data management and data integration in the HUPO Plasma Proteome Project / Gilbert S. Omenn -- Statistics in experimental design, preprocessing, and analysis of proteomics data / Klaus Jung -- The evolution of protein interaction networks / Andreas Schüler and Erich Bornberg-Bauer -- Cytoscape : software for visualization and analysis of biological networks / Michael Kohl, Sebastian Wiese, and Bettina Warscheid -- Text mining for systems modeling / Axel Kowald and Seastian Schmeier -- Identification of alternatively spliced transcripts using a proteomic informatics approach / Rajasree Menon and Gilbert S. Omenn -- Distributions of ion series in ETD and CID spectra : making a comparison / Sarah R. Hart ... [and others] -- Evaluation of peak-picking algorighms for protein mass spectrometry / Chris Bauer, Rainer Cramer, and Johannes Schuchhardt -- OpenMS and TOPP : open source software for LC-MS data analysis / Andreas Bertsch ... [and others] -- LC/MS data processing for label-free quantitative analysis / Patricia M. Palagi ... [and others] -- Spectral properties of correlation matrices-towards enhanced spectral clustering / Daniel Fulger and Enrico Scalas -- Standards, databases, and modeling tools in systems biology / Michael Kohl -- Modeling of cellular processes : methods, data, and requirements / Thomas Millat ... [and others].

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